Single-molecule FRET analysis of protein-DNA complexes.

Heilemann M, Hwang LC, Lymperopoulos K, Kapanidis AN

We present a single-molecule method for studying protein-DNA interactions based on fluorescence resonance energy transfer (FRET) and alternating-laser excitation (ALEX) of single diffusing molecules. An application of this method to the study of a bacterial transcription initiation complex is presented.

Keywords:

Buffers

,

Chromatography, High Pressure Liquid

,

DNA

,

DNA-Directed RNA Polymerases

,

Electrophoresis, Polyacrylamide Gel

,

Fluorescence Resonance Energy Transfer

,

Fluorescent Dyes

,

Lasers

,

Proteins

,

Spectrophotometry, Ultraviolet

,

Staining and Labeling

,

Transcription, Genetic